RNAStructuromeDB: Gene Search
About RNAStructuromeDB Gene Search:
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) for specific genes (found within the Gencode comprehensive gene annotation set Version 26): search for one gene at a time (by using the "Is equal to" filter and inputting a single entry), or a list of genes (by using the "Contains any word" filter and inputting a space-separated list of gene symbols or Ensemble IDs).
Not sure what your gene symbol or Ensemble gene ID is?
Search for the official gene symbol at HGNC or Ensemble ID at Ensembl (should be in the format of ENSG00000##.#). To find data outside of gene regions use our Data Search tool.
If you find the RNAStructuromeDB helpful, please consider citing: Andrews RJ, Baber L, and Moss W. Sci Rep. 2017.
To download the complete dataset for VEGFA, click CSV button at bottom of page.
Windows with interesting structures (z-score < -1; ranked from most negative to least negative) are displayed below.