RNAStructuromeDB: Gene Search
About RNAStructuromeDB Gene Search:
Find RNA folding metrics which have been calculated for ~156,000,000 scanning windows canvassing the entire human reference genome (hg38) and linked to annotations for specific gene loci (described within the Gencode comprehensive gene annotation set Version 26): search for one gene at a time (by using the "Is equal to" filter and inputting a single entry), or a list of genes (by using the "Contains any word" filter and inputting a space-separated list of gene symbols or Ensemble IDs).
Not sure what your gene symbol or Ensemble gene ID is?
Search for the official gene symbol at HGNC or Ensemble ID at Ensembl (should be in the format of ENSG00000##.#). To find data outside of gene regions use our Data Search tool.
If you find the RNAStructuromeDB helpful, please consider citing the corresponding manuscript: RNAStructuromeDB: A genome-wide database for RNA structural inference
To download the complete dataset for VEGFA, click CSV button at bottom of page.
Windows with interesting structures (z-score < -1; ranked from most negative to least negative) are displayed below.