Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,361
Ending coordinate (hg38): 2,838,480
Minimum free energy (kcal/mol): -34.1
z-score: -1.76
p-value of z-score: 0.06
Ensemble Diversity: 13.06
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CCAAAGAGCAAGUCCAAGGACAGGCCCUGCUCACCCUGGAGCAGAAGAAUCACCUUGCAGGGCAGCACACACCACCCCCUGGGUUCAGCAUGUCGCCAGCUGCCUGCACUUCCACACCUA
.......((..(((....)))..)).((((((......))))))...........((((((.(((((((..(.((((...))))...)..))).....))))))))))............
JBrowse Link: chr17:2,838,361..2,838,480
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,401
Ending coordinate (hg38): 2,838,520
Minimum free energy (kcal/mol): -25.2
z-score: -1.16
p-value of z-score: 0.09
Ensemble Diversity: 28.49
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
UACAGGUCACCAUCCCAGUACAGGUCACCAUCCCAACUCUCCAAAGAGCAAGUCCAAGGACAGGCCCUGCUCACCCUGGAGCAGAAGAAUCACCUUGCAGGGCAGCACACACCACCCCCU
....(((......(((.(((.((((............(((....)))((..(((....)))..)).((((((......)))))).......))))))).)))........))).......
JBrowse Link: chr17:2,838,401..2,838,520
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,441
Ending coordinate (hg38): 2,838,560
Minimum free energy (kcal/mol): -24.7
z-score: -0.99
p-value of z-score: 0.16
Ensemble Diversity: 22.74
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GAAGAAUCACCCCACACAUCCCGAGGGGUCAACAACCCAGUACAGGUCACCAUCCCAGUACAGGUCACCAUCCCAACUCUCCAAAGAGCAAGUCCAAGGACAGGCCCUGCUCACCCUGGA
........(((((...........))))).......((.((((.((........)).)))).))...............((((..(((((.(.((.......)).).)))))....))))
JBrowse Link: chr17:2,838,441..2,838,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,481
Ending coordinate (hg38): 2,838,600
Minimum free energy (kcal/mol): -30.1
z-score: -1.65
p-value of z-score: 0.06
Ensemble Diversity: 22
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CAGUGGGACAGUGUUCUGCCCCAUGCUAUGUUCAUCUGUGGAAGAAUCACCCCACACAUCCCGAGGGGUCAACAACCCAGUACAGGUCACCAUCCCAGUACAGGUCACCAUCCCAACUCU
.(((((((..(((....(((((.((..((((......((((..........))))))))..)).))))).......((.((((.((........)).)))).)).)))..)))).)))..
JBrowse Link: chr17:2,838,481..2,838,600
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,521
Ending coordinate (hg38): 2,838,640
Minimum free energy (kcal/mol): -37.7
z-score: -1.16
p-value of z-score: 0.12
Ensemble Diversity: 24.27
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
UUCCUCAUCUGGAGCUCGGAGAAUGAGCAAAGGGUUCCCGCAGUGGGACAGUGUUCUGCCCCAUGCUAUGUUCAUCUGUGGAAGAAUCACCCCACACAUCCCGAGGGGUCAACAACCCAG
((((......))))(((((.(((((((((..((....))(((.((((.(((....))).)))))))..))))))).(((((..........)))))..)))))))((((.....))))..
JBrowse Link: chr17:2,838,521..2,838,640
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,561
Ending coordinate (hg38): 2,838,680
Minimum free energy (kcal/mol): -32.2
z-score: -0.44
p-value of z-score: 0.25
Ensemble Diversity: 15.59
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
GGAAUCACUGCGCCAAUUCAUCCAAUUCCACCCGCCUCCCUUCCUCAUCUGGAGCUCGGAGAAUGAGCAAAGGGUUCCCGCAGUGGGACAGUGUUCUGCCCCAUGCUAUGUUCAUCUGUG
((((((.((..((..((((.(((..(((((...................)))))...)))))))..))..)))))))).(((.((((.(((....))).)))))))..............
JBrowse Link: chr17:2,838,561..2,838,680
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,601
Ending coordinate (hg38): 2,838,720
Minimum free energy (kcal/mol): -21.5
z-score: -1.02
p-value of z-score: 0.09
Ensemble Diversity: 17.31
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
CCUCUUACCACCAAAUGUCAUCUCCCCCGGUUACAAUUUCGGAAUCACUGCGCCAAUUCAUCCAAUUCCACCCGCCUCCCUUCCUCAUCUGGAGCUCGGAGAAUGAGCAAAGGGUUCCCG
...............(((.(((......))).))).....((((((.((..((..((((.(((..(((((...................)))))...)))))))..))..))))))))..
JBrowse Link: chr17:2,838,601..2,838,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,641
Ending coordinate (hg38): 2,838,760
Minimum free energy (kcal/mol): -18.3
z-score: 0.488
p-value of z-score: 0.67
Ensemble Diversity: 35.41
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
UUCUCUCCGGGGAUCAGUUUCGGGGAAUGCUGUGUCCCGUCCUCUUACCACCAAAUGUCAUCUCCCCCGGUUACAAUUUCGGAAUCACUGCGCCAAUUCAUCCAAUUCCACCCGCCUCCC
...(((((((((.....)))))))))..((.(((..(((.......(((...................)))........)))...))).)).............................
JBrowse Link: chr17:2,838,641..2,838,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,681
Ending coordinate (hg38): 2,838,800
Minimum free energy (kcal/mol): -26.3
z-score: -0.03
p-value of z-score: 0.51
Ensemble Diversity: 20.13
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GAGCUGCACAGAAAGAGAACUGCAAAGGGAAUAAACAGCUUUCUCUCCGGGGAUCAGUUUCGGGGAAUGCUGUGUCCCGUCCUCUUACCACCAAAUGUCAUCUCCCCCGGUUACAAUUUC
(((.((.(((..(((((.((......((((....(((((....(((((((((.....)))))))))..))))).)))))).))))).........))))).)))................
JBrowse Link: chr17:2,838,681..2,838,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 2,838,721
Ending coordinate (hg38): 2,838,840
Minimum free energy (kcal/mol): -28.2
z-score: -0.34
p-value of z-score: 0.29
Ensemble Diversity: 44.39
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
AUAUAUUAGCCCCUAACUGAGACAUUCUCCUUGAAGUGAUGAGCUGCACAGAAAGAGAACUGCAAAGGGAAUAAACAGCUUUCUCUCCGGGGAUCAGUUUCGGGGAAUGCUGUGUCCCGU
(((((.((.((((.((((((.......((((((.((.((.((((((..(((........))).............)))))))).)).))))))))))))..))))..)).))))).....
JBrowse Link: chr17:2,838,721..2,838,840
Forna Structure: Visualize MFE with FORNA
CSV