Downloads

Namesort descending Organism Program, Pipeline Name or Method Name Source Name
24h Post Lytic Activation (1/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564919 SRR10564919 View on JBrowse
24h Post Lytic Activation (2/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564920 SRR10564920 View on JBrowse
24h Post Lytic Activation (3/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564921 SRR10564921 View on JBrowse
3h Post Lytic Activation (1/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564916 SRR10564916 View on JBrowse
3h Post Lytic Activation (2/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564917 SRR10564917 View on JBrowse
3h Post Lytic Activation (3/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564918 SRR10564918 View on JBrowse
48h Post Lytic Activation (1/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564922 SRR10564922 View on JBrowse
48h Post Lytic Activation (2/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564923 SRR10564923 View on JBrowse
48h Post Lytic Activation (3/3) - BAM Coverage Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564924 SRR10564924 View on JBrowse
All Chromosome - Full Data Set - Forward Strand Windows Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
All Chromosome - Full Data Set - Reverse Strand Windows Homo sapiens (Human) RNAStructuromeDB GRCh38 View on JBrowse
ArcTest Homo sapiens (Human) Test Test View on JBrowse
A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs. Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold ScanFold
BAM18 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564918 SRR10564918 View on JBrowse
BAM19 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564919 SRR10564919 View on JBrowse
BAM20 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564920 SRR10564920 View on JBrowse
BAM21 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564921 SRR10564921 View on JBrowse
BAM22 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564922 SRR10564922 View on JBrowse
BAM23 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564923 SRR10564923 View on JBrowse
BAM24 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) SRR10564924 SRR10564924 View on JBrowse
BAM Test Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) bowtie 2 Nascent Transcriptomics Reveal Cellular Prolytic Factors Upregulated Upstream of the Latent-to-Lytic Switch Protein of Epstein-B View on JBrowse
Clinical SNP Variants Homo sapiens (Human) NCBI ClinVar dataset NCBI View on JBrowse
Conservation Score (from 100 vertebrates) Homo sapiens (Human) phastCons100way UCSC View on JBrowse
DFAM Track Homo sapiens (Human) UCSC Genome Browser RepeatMasker USCS Genome Browser View on JBrowse
EBV-1 GFF3 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) NCBI NC_007605.1 View on JBrowse
EBV-2 GFF3 Lymphocryptovirus Human gammaherpesvirus 4 Type 2 (EBV Type 2) NCBI NC_009334.1 View on JBrowse
EBV Type 1 Forward Scan Results (GFF3) Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold EBV Type 1 View on JBrowse
Ensembl Annotations (release 91) Homo sapiens (Human) Ensembl Annotations Ensembl View on JBrowse
Ensemble Diversity - GRCh38 - Forward Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Ensemble Diversity - GRCh38 - Reverse Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Ensemble Diversity Value Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold ScanFold View on JBrowse
Ensemble Regulatory Build (Release 91) Homo sapiens (Human) Ensembl Regulatory Build homo_sapiens.GRCh38.Regulatory_Build.regulatory_features.20161111.gff.gz View on JBrowse
Ensembl Variation (release 91) Homo sapiens (Human) Ensembl Variation ftp://ftp.ensembl.org/pub/release-91/variation/vcf/homo_sapiens/homo_sapiens.vcf.gz View on JBrowse
Forward Arc Test EBV-1 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold EBV Type 1 View on JBrowse
Frequency of MFE - GRCh38 - Forward Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Frequency of MFE - GRCh38 - Reverse Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
HCMV GFF3 Cytomegalovirus Human betaherpesvirus 5 (Human Cytomegalovirus) NCBI NC_006273.2 View on JBrowse
Herpesvirus_Supplemental_Data_S1 Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold ScanFold
HHV-6A GFF3 Roseolovirus Human betaherpesvirus 6A (Human herpesvirus 6) NCBI NC_001664.4 View on JBrowse
HHV-6B GFF3 Roseolovirus Human betaherpesvirus 6B (Human herpesvirus 6B) NCBI NC_000898.1 View on JBrowse
HHV-7 GFF3 Roseolovirus Human betaherpesvirus 7 (Human Herpesvirus 7) NCBI NC_001716.2 View on JBrowse
High Resolution Figures Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) https://www.biorxiv.org/content/10.1101/2020.04.17.045161v1 SARS-CoV-2
HSV-1 GFF3 Simplexvirus Human alphaherpesvirus 1 (Herpes Simplex Virus 1) NCBI NC_001806.2 View on JBrowse
HSV-2 GFF3 Simplexvirus Human alphaherpesvirus 2 (Herpes Simplex Virus 2) NCBI NC_001798.2 View on JBrowse
KSHV GFF3 Rhadinovirus Human gammaherpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) NCBI NC_009333.1 View on JBrowse
LNCIPEDIA Hg38 Long Non-Coding RNA Homo sapiens (Human) LNCipedia LNCipedia.org View on JBrowse
MFE Lentivirus Human immunodeficiency virus 1 (HIV-1) ScanFold-Scan ScanFold-Scan View on JBrowse
MFE (kcal/mol) Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold ScanFold View on JBrowse
Minimum Free Energy - GRCh38 - Forward Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Minimum Free Energy - GRCh38 - Reverse Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
NCBI Genome Annotations Homo sapiens (Human) NCBI NCBI View on JBrowse
p-value Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold ScanFold View on JBrowse
P-Values - GRCh38 - Forward Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
P-Values - GRCh38 - Reverse Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Rfam Bed Track (Version 13) Homo sapiens (Human) Manual annotations Rfam View on JBrowse
RNACentral GFF3 Track Homo sapiens (Human) RNAcentral ftp://ftp.ebi.ac.uk/pub/databases/RNAcentral/releases/8.0/genome_coordinates/Homo_sapiens.GRCh38.gff.gz View on JBrowse
RSV Gene Annotations Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(+strand; coding strand) MFE Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(+strand) Ensemble Diversity Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(-strand; genomic) MFE Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(+strand) ScanFold-Scan Results Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(-strand) z-score Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
RSV(+strand) z-score Orthopneumovirus Human (Respiratory syncytial virus) ScanFold ScanFold View on JBrowse
SARS-CoV-2-ExtractedStructures Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold SARS-CoV-2
SARS-CoV-2 Gene Features Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) NCBI NCBI View on JBrowse
SARS-CoV-2 Results Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold SARS-CoV-2
Scanning Window Results (SARS-CoV-2) Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold SARS-CoV-2 View on JBrowse
Supplemental Tables (10.1101/2020.04.17.045161) Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) https://www.biorxiv.org/content/10.1101/2020.04.17.045161v1 https://www.biorxiv.org/content/10.1101/2020.04.17.045161v1
Thermodynamic z-score Betacoronavirus Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ScanFold ScanFold View on JBrowse
VZV GFF3 Varicellovirus Human alphaherpesvirus 3 (Varicella-Zoster Virus) NCBI NC_001348.1 View on JBrowse
ZIKV Features Flavivirus zika virus (Zika Virus) RNA Structurome DB NCBI NucCore View on JBrowse
ZIKV MFE Flavivirus zika virus (Zika Virus) RNA Structurome DB RNA Structurome DB View on JBrowse
ZIKV z-score Flavivirus zika virus (Zika Virus) RNA Structurome DB RNA Structurome DB View on JBrowse
z-score Lentivirus Human immunodeficiency virus 1 (HIV-1) ScanFold-Scan ScanFold-Scan View on JBrowse
Z-score Forward Strand (EBV-2) Lymphocryptovirus Human gammaherpesvirus 4 Type 2 (EBV Type 2) ScanFold EBV Type 2 View on JBrowse
Z-score Forward Strand (EBV Type 1) Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold EBV Type 1 View on JBrowse
Z-score Forward Strand (HCMV) Cytomegalovirus Human betaherpesvirus 5 (Human Cytomegalovirus) ScanFold HCMV View on JBrowse
Z-score Forward Strand (HHV-6A) Roseolovirus Human betaherpesvirus 6A (Human herpesvirus 6) ScanFold HHV-6A View on JBrowse
Z-score Forward Strand (HHV-6B) Roseolovirus Human betaherpesvirus 6B (Human herpesvirus 6B) ScanFold HHV-6B View on JBrowse
Z-score Forward Strand (HHV-7) Roseolovirus Human betaherpesvirus 7 (Human Herpesvirus 7) ScanFold ScanFold View on JBrowse
Z-score Forward Strand (HSV-1) Simplexvirus Human alphaherpesvirus 1 (Herpes Simplex Virus 1) ScanFold ScanFold View on JBrowse
Z-score Forward Strand (HSV-2) Simplexvirus Human alphaherpesvirus 2 (Herpes Simplex Virus 2) ScanFold ScanFold View on JBrowse
Z-score Forward Strand (KSHV) Rhadinovirus Human gammaherpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) ScanFold ScanFold View on JBrowse
Z-score Forward Strand (VZV) Varicellovirus Human alphaherpesvirus 3 (Varicella-Zoster Virus) ScanFold ScanFold View on JBrowse
Z-score Reverse Strand (EBV-2) Lymphocryptovirus Human gammaherpesvirus 4 Type 2 (EBV Type 2) ScanFold EBV-2 View on JBrowse
Z-score Reverse Strand (EBV Type 1) Lymphocryptovirus Human gammaherpesvirus 4 Type 1 (EBV Type 1) ScanFold EBV Type 1 View on JBrowse
Z-score Reverse Strand (HCMV) Cytomegalovirus Human betaherpesvirus 5 (Human Cytomegalovirus) ScanFold HCMV View on JBrowse
Z-score Reverse Strand (HHV-6A) Roseolovirus Human betaherpesvirus 6A (Human herpesvirus 6) ScanFold HHV-6A View on JBrowse
Z-score Reverse Strand (HHV-6B) Roseolovirus Human betaherpesvirus 6B (Human herpesvirus 6B) ScanFold HHV-6B View on JBrowse
Z-score Reverse Strand (HHV-7) Roseolovirus Human betaherpesvirus 7 (Human Herpesvirus 7) ScanFold ScanFold View on JBrowse
Z-score Reverse Strand (HSV-1) Simplexvirus Human alphaherpesvirus 1 (Herpes Simplex Virus 1) ScanFold ScanFold View on JBrowse
Z-score Reverse Strand (HSV-2) Simplexvirus Human alphaherpesvirus 2 (Herpes Simplex Virus 2) ScanFold ScanFold View on JBrowse
Z-score Reverse Strand (KSHV) Rhadinovirus Human gammaherpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) ScanFold ScanFold View on JBrowse
Z-score Reverse Strand (VZV) Varicellovirus Human alphaherpesvirus 3 (Varicella-Zoster Virus) ScanFold ScanFold View on JBrowse
Z-Scores - GRCh38 - Forward Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse
Z-Scores - GRCh38 - Reverse Strand Homo sapiens (Human) RNAstructuromeDB GRCh38 View on JBrowse