Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,121
Ending coordinate (hg38): 315,240
Minimum free energy (kcal/mol): -15.1
z-score: 2.067
p-value of z-score: 0.96
Ensemble Diversity: 36.59
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
UGAAUGAAGGUGGGGGCACAGAGACUACAGGUGAAUGGAGGUGGAGCACAGGGACUACAGGUGAAUGGAGGUGGGGGCACAGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACA .........(((....(((.....((((............((((..(....)..))))............)))).....((..((((...))))..))...)))...))).......... JBrowse Link: chr17:315,121..315,240
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,121
Ending coordinate (hg38): 315,240
Minimum free energy (kcal/mol): -15.1
z-score: 2.067
p-value of z-score: 0.96
Ensemble Diversity: 36.59
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
UGAAUGAAGGUGGGGGCACAGAGACUACAGGUGAAUGGAGGUGGAGCACAGGGACUACAGGUGAAUGGAGGUGGGGGCACAGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACA .........(((....(((.....((((............((((..(....)..))))............)))).....((..((((...))))..))...)))...))).......... JBrowse Link: chr17:315,121..315,240
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 315,041
Ending coordinate (hg38): 315,160
Minimum free energy (kcal/mol): -24.8
z-score: 0.429
p-value of z-score: 0.77
Ensemble Diversity: 32.68
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
AGGGACUACAGGUCAAUGGAGGUGGAGCACAGAGACUACAGGUCAAUGGAGGUGGGGUCACAGGGACUACAAUUCAGUGGAGGUGGAGCACAGGGACUACAGUUCAGUGGAGGUGGAGUA ...((((...((((..((..(......).))..))))...)))).......(((....))).....((((..((((.((((.((((..(....)..))))..)))).)))).)))).... JBrowse Link: chr17:315,041..315,160
Forna Structure: Visualize MFE with FORNA |
