Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,081
Ending coordinate (hg38): 39,072,200
Minimum free energy (kcal/mol): -46.4
z-score: -1.36
p-value of z-score: 0.06
Ensemble Diversity: 11.2
Frequency of MFE in ensemble: 0.11
Sequence & Folding Structure:
UGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGGGGCCUGUGGCCAUCCCCUCUGAUCCCCAUGGGCUCAUAGU
((((((...((((((.....(((.((.((((........)))))))))...)))))).))))))(((..(((((((((...)))))).)))..)))((.(((.(((...))).))).)).
JBrowse Link: chr17:39,072,081..39,072,200
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,121
Ending coordinate (hg38): 39,072,240
Minimum free energy (kcal/mol): -47
z-score: -2.09
p-value of z-score: 0.03
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
AUUUCUCAUCUCAGCCCUGAACCUCCUGUGGUUCUUCUCCUGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGG
......(((((..(((..(((((......)))))...(((((((((...((((((.....(((.((.((((........)))))))))...)))))).)))))))))..)))..))))).
JBrowse Link: chr17:39,072,121..39,072,240
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 39,072,121
Ending coordinate (hg38): 39,072,240
Minimum free energy (kcal/mol): -47
z-score: -2.09
p-value of z-score: 0.03
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
AUUUCUCAUCUCAGCCCUGAACCUCCUGUGGUUCUUCUCCUGGCUCUCUGUCCUUGAAUAUUCACUGCCCAGAAAGGAGUGGGAGGAGGGGAAGGACUGAGCCAGGGCAGGUAUAGGUGG
......(((((..(((..(((((......)))))...(((((((((...((((((.....(((.((.((((........)))))))))...)))))).)))))))))..)))..))))).
JBrowse Link: chr17:39,072,121..39,072,240
Forna Structure: Visualize MFE with FORNA
CSV