Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,641
Ending coordinate (hg38): 75,182,760
Minimum free energy (kcal/mol): -59.2
z-score: -3.30
p-value of z-score: 0
Ensemble Diversity: 16.87
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGCUUUCCCGGGCCCCCCACGGGGCCGGCCGCGGCUCAGGCCCGGGCGCUCCGCGCCAUUUUCCUCCCUCCCUCUCUUCCUCC
(((((((((((((((.((((((((((((((...))))).........((((((....)))))))).)).))))).)).)))))).).))).)))..........................
JBrowse Link: chr17:75,182,641..75,182,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,681
Ending coordinate (hg38): 75,182,800
Minimum free energy (kcal/mol): -70.5
z-score: 0.025
p-value of z-score: 0.41
Ensemble Diversity: 46.53
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGCUUUCCCGGGCCCCCCACGGGGCCGGCCGCGGCUCAGGCCC
..........((((.((((((((.((((((((((((((..((((((...))))))......))))).))))))))).)))....((((.((((....))))))))..)))))..))))..
JBrowse Link: chr17:75,182,681..75,182,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,681
Ending coordinate (hg38): 75,182,800
Minimum free energy (kcal/mol): -70.5
z-score: 0.025
p-value of z-score: 0.41
Ensemble Diversity: 46.53
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGCUUUCCCGGGCCCCCCACGGGGCCGGCCGCGGCUCAGGCCC
..........((((.((((((((.((((((((((((((..((((((...))))))......))))).))))))))).)))....((((.((((....))))))))..)))))..))))..
JBrowse Link: chr17:75,182,681..75,182,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,681
Ending coordinate (hg38): 75,182,800
Minimum free energy (kcal/mol): -70.5
z-score: 0.025
p-value of z-score: 0.41
Ensemble Diversity: 46.53
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGCUUUCCCGGGCCCCCCACGGGGCCGGCCGCGGCUCAGGCCC
..........((((.((((((((.((((((((((((((..((((((...))))))......))))).))))))))).)))....((((.((((....))))))))..)))))..))))..
JBrowse Link: chr17:75,182,681..75,182,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,721
Ending coordinate (hg38): 75,182,840
Minimum free energy (kcal/mol): -62.5
z-score: 0.015
p-value of z-score: 0.48
Ensemble Diversity: 45.46
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
CUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGC
((((((.(((.(........).))).))))))..((((((((((...........)))).))))))(((.((.((((.(((((....))))))))))).)))..((((((...)))))).
JBrowse Link: chr17:75,182,721..75,182,840
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,721
Ending coordinate (hg38): 75,182,840
Minimum free energy (kcal/mol): -62.5
z-score: 0.015
p-value of z-score: 0.48
Ensemble Diversity: 45.46
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
CUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGC
((((((.(((.(........).))).))))))..((((((((((...........)))).))))))(((.((.((((.(((((....))))))))))).)))..((((((...)))))).
JBrowse Link: chr17:75,182,721..75,182,840
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,721
Ending coordinate (hg38): 75,182,840
Minimum free energy (kcal/mol): -62.5
z-score: 0.015
p-value of z-score: 0.48
Ensemble Diversity: 45.46
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
CUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCGGGCCGGGGUCCGGCCAGAGCCCGCCGCUGGCUCCCAGCGC
((((((.(((.(........).))).))))))..((((((((((...........)))).))))))(((.((.((((.(((((....))))))))))).)))..((((((...)))))).
JBrowse Link: chr17:75,182,721..75,182,840
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,761
Ending coordinate (hg38): 75,182,880
Minimum free energy (kcal/mol): -50.9
z-score: 0.484
p-value of z-score: 0.67
Ensemble Diversity: 39.63
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GUACCUCUUUUGUGAAGCGGCAGCUGAGGAGACUCCGGCGCUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCG
...((((..((((......))))..)))).((((((...(((((((.(((.(........).))).))))))).((((((((((...........)))).))))))))))))........
JBrowse Link: chr17:75,182,761..75,182,880
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,761
Ending coordinate (hg38): 75,182,880
Minimum free energy (kcal/mol): -50.9
z-score: 0.484
p-value of z-score: 0.67
Ensemble Diversity: 39.63
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GUACCUCUUUUGUGAAGCGGCAGCUGAGGAGACUCCGGCGCUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCG
...((((..((((......))))..)))).((((((...(((((((.(((.(........).))).))))))).((((((((((...........)))).))))))))))))........
JBrowse Link: chr17:75,182,761..75,182,880
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 75,182,761
Ending coordinate (hg38): 75,182,880
Minimum free energy (kcal/mol): -50.9
z-score: 0.484
p-value of z-score: 0.67
Ensemble Diversity: 39.63
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GUACCUCUUUUGUGAAGCGGCAGCUGAGGAGACUCCGGCGCUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCUCGCCGCCGGCCCCUUCGCCUCGCCGCGCGGUGGGGGUCAUGGCGCG
...((((..((((......))))..)))).((((((...(((((((.(((.(........).))).))))))).((((((((((...........)))).))))))))))))........
JBrowse Link: chr17:75,182,761..75,182,880
Forna Structure: Visualize MFE with FORNA
CSV