Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,441
Ending coordinate (hg38): 4,204,560
Minimum free energy (kcal/mol): -19.9
z-score: 0.346
p-value of z-score: 0.58
Ensemble Diversity: 39.16
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUUUUGCUAACUUUAGAGUGUUGCAUAUUACGGUAGACAGAGC
..................((((((((((((((..(((((((..(((.......)))...))))))))))))))))((((..(((.(((........)))))).)))).......))))).
JBrowse Link: chr17:4,204,441..4,204,560
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,481
Ending coordinate (hg38): 4,204,600
Minimum free energy (kcal/mol): -18.5
z-score: 0.285
p-value of z-score: 0.61
Ensemble Diversity: 44.009999999999998
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
AUUGCCAAGAAUUAGUGAUACAUUUUUGAUGUUUAUUUUCAGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUU
.....(((((((((....)).)))))))..(((((((.................(((((.((((((((((...(((....)))....))))))).))).)))))...)))))))......
JBrowse Link: chr17:4,204,481..4,204,600
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,481
Ending coordinate (hg38): 4,204,600
Minimum free energy (kcal/mol): -18.5
z-score: 0.285
p-value of z-score: 0.61
Ensemble Diversity: 44.009999999999998
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
AUUGCCAAGAAUUAGUGAUACAUUUUUGAUGUUUAUUUUCAGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUU
.....(((((((((....)).)))))))..(((((((.................(((((.((((((((((...(((....)))....))))))).))).)))))...)))))))......
JBrowse Link: chr17:4,204,481..4,204,600
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 4,204,481
Ending coordinate (hg38): 4,204,600
Minimum free energy (kcal/mol): -18.5
z-score: 0.285
p-value of z-score: 0.61
Ensemble Diversity: 44.009999999999998
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
AUUGCCAAGAAUUAGUGAUACAUUUUUGAUGUUUAUUUUCAGAUGAUUUAACCUUCCACUCUGAGUUUAUUAAUUGCUUGCAAGUAUGUGGAUUACAGCGUGGGUAUAAUAAACUUGAUU
.....(((((((((....)).)))))))..(((((((.................(((((.((((((((((...(((....)))....))))))).))).)))))...)))))))......
JBrowse Link: chr17:4,204,481..4,204,600
Forna Structure: Visualize MFE with FORNA
CSV