Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,641
Ending coordinate (hg38): 16,650,760
Minimum free energy (kcal/mol): -22.9
z-score: -2.50
p-value of z-score: 0.03
Ensemble Diversity: 15.33
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUAUUGACAAUCUGUACUGUUUGAUAUCCUACAUCAGGCACUC ..................(((((....((((((((((....))))))))))((((..........))))............)))))........((((((((.......))))))))... JBrowse Link: chr17:16,650,641..16,650,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,641
Ending coordinate (hg38): 16,650,760
Minimum free energy (kcal/mol): -22.9
z-score: -2.50
p-value of z-score: 0.03
Ensemble Diversity: 15.33
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUAUUGACAAUCUGUACUGUUUGAUAUCCUACAUCAGGCACUC ..................(((((....((((((((((....))))))))))((((..........))))............)))))........((((((((.......))))))))... JBrowse Link: chr17:16,650,641..16,650,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,681
Ending coordinate (hg38): 16,650,800
Minimum free energy (kcal/mol): -21.3
z-score: -1.95
p-value of z-score: 0.03
Ensemble Diversity: 29.57
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUA (((..((((...(((((....)))))(((.....)))......((.((((....)))).)).((((.((((((((((....)))))))))).)))).......))))..)))........ JBrowse Link: chr17:16,650,681..16,650,800
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,681
Ending coordinate (hg38): 16,650,800
Minimum free energy (kcal/mol): -21.3
z-score: -1.95
p-value of z-score: 0.03
Ensemble Diversity: 29.57
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUA (((..((((...(((((....)))))(((.....)))......((.((((....)))).)).((((.((((((((((....)))))))))).)))).......))))..)))........ JBrowse Link: chr17:16,650,681..16,650,800
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,681
Ending coordinate (hg38): 16,650,800
Minimum free energy (kcal/mol): -21.3
z-score: -1.95
p-value of z-score: 0.03
Ensemble Diversity: 29.57
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUA (((..((((...(((((....)))))(((.....)))......((.((((....)))).)).((((.((((((((((....)))))))))).)))).......))))..)))........ JBrowse Link: chr17:16,650,681..16,650,800
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,681
Ending coordinate (hg38): 16,650,800
Minimum free energy (kcal/mol): -21.3
z-score: -1.95
p-value of z-score: 0.03
Ensemble Diversity: 29.57
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAAGAUUCAUGAGGCUAGUAUUACCAUCCUAGAAGAAUUUAUA (((..((((...(((((....)))))(((.....)))......((.((((....)))).)).((((.((((((((((....)))))))))).)))).......))))..)))........ JBrowse Link: chr17:16,650,681..16,650,800
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,721
Ending coordinate (hg38): 16,650,840
Minimum free energy (kcal/mol): -18.5
z-score: -1.68
p-value of z-score: 0.03
Ensemble Diversity: 12.74
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AGGAGCAGAUUCCACAUGUUUAAGCAUAACAAAGGCCCUACUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAA (((.((((........((((((((((.......((.(((......))).)).......)))))).))))..............((.((((....)))).))..))))))).......... JBrowse Link: chr17:16,650,721..16,650,840
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,721
Ending coordinate (hg38): 16,650,840
Minimum free energy (kcal/mol): -18.5
z-score: -1.68
p-value of z-score: 0.03
Ensemble Diversity: 12.74
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AGGAGCAGAUUCCACAUGUUUAAGCAUAACAAAGGCCCUACUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAA (((.((((........((((((((((.......((.(((......))).)).......)))))).))))..............((.((((....)))).))..))))))).......... JBrowse Link: chr17:16,650,721..16,650,840
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,721
Ending coordinate (hg38): 16,650,840
Minimum free energy (kcal/mol): -18.5
z-score: -1.68
p-value of z-score: 0.03
Ensemble Diversity: 12.74
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AGGAGCAGAUUCCACAUGUUUAAGCAUAACAAAGGCCCUACUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAA (((.((((........((((((((((.......((.(((......))).)).......)))))).))))..............((.((((....)))).))..))))))).......... JBrowse Link: chr17:16,650,721..16,650,840
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 16,650,721
Ending coordinate (hg38): 16,650,840
Minimum free energy (kcal/mol): -18.5
z-score: -1.68
p-value of z-score: 0.03
Ensemble Diversity: 12.74
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AGGAGCAGAUUCCACAUGUUUAAGCAUAACAAAGGCCCUACUUGCAGGACCAUAUAAUUGCUUAUAACACUUUUUGUACAAAAACUUAAUACUUAUUAUGUCACUGCCCUCAUGAAUAAA (((.((((........((((((((((.......((.(((......))).)).......)))))).))))..............((.((((....)))).))..))))))).......... JBrowse Link: chr17:16,650,721..16,650,840
Forna Structure: Visualize MFE with FORNA |
