Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,613,961
Ending coordinate (hg38): 3,614,080
Minimum free energy (kcal/mol): -40.2
z-score: -2.49
p-value of z-score: 0
Ensemble Diversity: 23.010000000000002
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
AUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACUCUGCUAGAGGCCAGGCCUCUCUUCCAGGCCUCCAGCUGGU
..........(((((..((((((.....((((.....((((((((((..............)).)))))))).))))...))))))((((((.((........)).)))))).)))))..
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,613,961
Ending coordinate (hg38): 3,614,080
Minimum free energy (kcal/mol): -40.2
z-score: -2.49
p-value of z-score: 0
Ensemble Diversity: 23.010000000000002
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
AUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACUCUGCUAGAGGCCAGGCCUCUCUUCCAGGCCUCCAGCUGGU
..........(((((..((((((.....((((.....((((((((((..............)).)))))))).))))...))))))((((((.((........)).)))))).)))))..
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,613,961
Ending coordinate (hg38): 3,614,080
Minimum free energy (kcal/mol): -40.2
z-score: -2.49
p-value of z-score: 0
Ensemble Diversity: 23.010000000000002
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
AUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACUCUGCUAGAGGCCAGGCCUCUCUUCCAGGCCUCCAGCUGGU
..........(((((..((((((.....((((.....((((((((((..............)).)))))))).))))...))))))((((((.((........)).)))))).)))))..
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,613,961
Ending coordinate (hg38): 3,614,080
Minimum free energy (kcal/mol): -40.2
z-score: -2.49
p-value of z-score: 0
Ensemble Diversity: 23.010000000000002
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
AUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACUCUGCUAGAGGCCAGGCCUCUCUUCCAGGCCUCCAGCUGGU
..........(((((..((((((.....((((.....((((((((((..............)).)))))))).))))...))))))((((((.((........)).)))))).)))))..
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,001
Ending coordinate (hg38): 3,614,120
Minimum free energy (kcal/mol): -35.2
z-score: -2.34
p-value of z-score: 0
Ensemble Diversity: 15.69
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACU
........(((((((.(((.((((.(((..((((((((....))))))))..))).....(((((....((((((.((..............)).)))))))))))))))))))))))))
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,001
Ending coordinate (hg38): 3,614,120
Minimum free energy (kcal/mol): -35.2
z-score: -2.34
p-value of z-score: 0
Ensemble Diversity: 15.69
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACU
........(((((((.(((.((((.(((..((((((((....))))))))..))).....(((((....((((((.((..............)).)))))))))))))))))))))))))
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,001
Ending coordinate (hg38): 3,614,120
Minimum free energy (kcal/mol): -35.2
z-score: -2.34
p-value of z-score: 0
Ensemble Diversity: 15.69
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACU
........(((((((.(((.((((.(((..((((((((....))))))))..))).....(((((....((((((.((..............)).)))))))))))))))))))))))))
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,001
Ending coordinate (hg38): 3,614,120
Minimum free energy (kcal/mol): -35.2
z-score: -2.34
p-value of z-score: 0
Ensemble Diversity: 15.69
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGUCCUCACUAAAUAGACUGGGGGAGCUGAGGACGCAGGCACU
........(((((((.(((.((((.(((..((((((((....))))))))..))).....(((((....((((((.((..............)).)))))))))))))))))))))))))
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,041
Ending coordinate (hg38): 3,614,160
Minimum free energy (kcal/mol): -16
z-score: 0.619
p-value of z-score: 0.74
Ensemble Diversity: 28
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AUUAUUUGGCCUUGGCAAGUCCCUUCCCUUCUUUGUUUUCCCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGU
.......(((...(((..............................(((........))).....(((..((((((((....))))))))..))).......)))...))).........
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,614,041
Ending coordinate (hg38): 3,614,160
Minimum free energy (kcal/mol): -16
z-score: 0.619
p-value of z-score: 0.74
Ensemble Diversity: 28
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AUUAUUUGGCCUUGGCAAGUCCCUUCCCUUCUUUGUUUUCCCAUCUCCAGUGUCUUGUGGUCUUAAGUCCUUGGGUUAGAAUUAACUCAACAGCUCAUAGCAGCUUUCGCCUCCAUUCGU
.......(((...(((..............................(((........))).....(((..((((((((....))))))))..))).......)))...))).........
Forna Structure: Visualize MFE with FORNA
CSV