Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,201
Ending coordinate (hg38): 46,349,320
Minimum free energy (kcal/mol): -15.4
z-score: -0.26
p-value of z-score: 0.35
Ensemble Diversity: 25.42
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUGCAACCAUCACCACCAUUCAUUUCUGUAACUAUUUUCAUCU .(((((...((((((.(((((....)))))))........((((((....))))))))))...))))).................................................... JBrowse Link: chr17:46,349,201..46,349,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,241
Ending coordinate (hg38): 46,349,360
Minimum free energy (kcal/mol): -24.9
z-score: -0.47
p-value of z-score: 0.29
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
UCAUGGGCUCAAGUGGUUCUCCUACCUCAGCCUCCUGCAUAACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUG ....(((((...((((.....))))...)))))..(((((..(((......)))..)))))..((((......(((.(((((((((....)))))).))).)))))))............ JBrowse Link: chr17:46,349,241..46,349,360
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,241
Ending coordinate (hg38): 46,349,360
Minimum free energy (kcal/mol): -24.9
z-score: -0.47
p-value of z-score: 0.29
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
UCAUGGGCUCAAGUGGUUCUCCUACCUCAGCCUCCUGCAUAACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUG ....(((((...((((.....))))...)))))..(((((..(((......)))..)))))..((((......(((.(((((((((....)))))).))).)))))))............ JBrowse Link: chr17:46,349,241..46,349,360
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,241
Ending coordinate (hg38): 46,349,360
Minimum free energy (kcal/mol): -24.9
z-score: -0.47
p-value of z-score: 0.29
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
UCAUGGGCUCAAGUGGUUCUCCUACCUCAGCCUCCUGCAUAACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUG ....(((((...((((.....))))...)))))..(((((..(((......)))..)))))..((((......(((.(((((((((....)))))).))).)))))))............ JBrowse Link: chr17:46,349,241..46,349,360
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 46,349,241
Ending coordinate (hg38): 46,349,360
Minimum free energy (kcal/mol): -24.9
z-score: -0.47
p-value of z-score: 0.29
Ensemble Diversity: 32.11
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
UCAUGGGCUCAAGUGGUUCUCCUACCUCAGCCUCCUGCAUAACUGGGACUACAGGUGUGCAACACUGCACCCAGCUCUAUCUUAAACAUUUUUAAGUGUAUAGUCAGUCAUAAUAUUCUG ....(((((...((((.....))))...)))))..(((((..(((......)))..)))))..((((......(((.(((((((((....)))))).))).)))))))............ JBrowse Link: chr17:46,349,241..46,349,360
Forna Structure: Visualize MFE with FORNA |
