Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,641
Ending coordinate (hg38): 31,490,760
Minimum free energy (kcal/mol): -33.1
z-score: -1.30
p-value of z-score: 0.12
Ensemble Diversity: 11.61
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
ACAUGGCAAAACCCCAUCUCUACAAAAACAAAAACAAAAAUUAGCCAGAUGCAGGGUGGCACACACCUGUAGUCCCAGCUGAGACUGAGGUGGGAAGAUUGCUUGAGCCUGGGAGGGUGG
....(((((...((((((((....................(((((..(((((((((((...))).)))))).))...)))))....))))))))....)))))...((((....))))..
JBrowse Link: chr17:31,490,641..31,490,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,681
Ending coordinate (hg38): 31,490,800
Minimum free energy (kcal/mol): -24.81
z-score: -1.93
p-value of z-score: 0.03
Ensemble Diversity: 29.02
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CAGAACCCUUGAGCCCAGGAGUUUAAGACCAGCCUGGACAACAUGGCAAAACCCCAUCUCUACAAAAACAAAAACAAAAAUUAGCCAGAUGCAGGGUGGCACACACCUGUAGUCCCAGCU
.......(((((((......)))))))...(((..((((....((((....................................))))..(((((((((...))).))))))))))..)))
JBrowse Link: chr17:31,490,681..31,490,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,721
Ending coordinate (hg38): 31,490,840
Minimum free energy (kcal/mol): -28.8
z-score: -1.81
p-value of z-score: 0
Ensemble Diversity: 33.8
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
UCAUGCCUGUAGUCCCAGCGCUUUGGGAAGGUGAGGCAGGCAGAACCCUUGAGCCCAGGAGUUUAAGACCAGCCUGGACAACAUGGCAAAACCCCAUCUCUACAAAAACAAAAACAAAAA
...(((((((.((((...((((((...))))))((((.(((.((((.((((....)))).))))..).)).)))))))).))).))))................................
JBrowse Link: chr17:31,490,721..31,490,840
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,761
Ending coordinate (hg38): 31,490,880
Minimum free energy (kcal/mol): -36.9
z-score: -0.21
p-value of z-score: 0.32
Ensemble Diversity: 37.52
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GGCACGAACAGAUAAAGAUGCUUCAGCUGGGUGUGGUGGCUCAUGCCUGUAGUCCCAGCGCUUUGGGAAGGUGAGGCAGGCAGAACCCUUGAGCCCAGGAGUUUAAGACCAGCCUGGACA
(((..(((((........)).)))..((((((..((.((.((.(((((((..((((((....)))))).......))))))))).))))...)))))).............)))......
JBrowse Link: chr17:31,490,761..31,490,880
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,801
Ending coordinate (hg38): 31,490,920
Minimum free energy (kcal/mol): -42.2
z-score: -0.69
p-value of z-score: 0.16
Ensemble Diversity: 33.46
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
AGGCCAGGGCACUGUGCCCCACUGCUAACACCAGACAGCAGGCACGAACAGAUAAAGAUGCUUCAGCUGGGUGUGGUGGCUCAUGCCUGUAGUCCCAGCGCUUUGGGAAGGUGAGGCAGG
.((((((....))).)))(((((....(((((...((((((((((...........).)))))..))))))))))))))....(((((....((((((....)))))).....)))))..
JBrowse Link: chr17:31,490,801..31,490,920
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,841
Ending coordinate (hg38): 31,490,960
Minimum free energy (kcal/mol): -42.5
z-score: -1.46
p-value of z-score: 0.06
Ensemble Diversity: 27.1
Frequency of MFE in ensemble: 0.08
Sequence & Folding Structure:
GAAGACAGAGUCCAGCCCCAGGGGUUCUGUAUGCCUGGCAAGGCCAGGGCACUGUGCCCCACUGCUAACACCAGACAGCAGGCACGAACAGAUAAAGAUGCUUCAGCUGGGUGUGGUGGC
....((((.((((.((((((((.((.....)).)))))...)))..)))).))))...(((((....(((((...((((((((((...........).)))))..)))))))))))))).
JBrowse Link: chr17:31,490,841..31,490,960
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,881
Ending coordinate (hg38): 31,491,000
Minimum free energy (kcal/mol): -37.5
z-score: -0.74
p-value of z-score: 0.25
Ensemble Diversity: 39.27
Frequency of MFE in ensemble: 0.13
Sequence & Folding Structure:
CCCAGUUCCUGAGUCAAGAGCCAGCAGAGCUGACCCAGAGGAAGACAGAGUCCAGCCCCAGGGGUUCUGUAUGCCUGGCAAGGCCAGGGCACUGUGCCCCACUGCUAACACCAGACAGCA
..(((((((((.((.....)))))..))))))...(((.((...((((.((((.((((((((.((.....)).)))))...)))..)))).))))...)).)))................
JBrowse Link: chr17:31,490,881..31,491,000
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,921
Ending coordinate (hg38): 31,491,040
Minimum free energy (kcal/mol): -37.7
z-score: -0.37
p-value of z-score: 0.35
Ensemble Diversity: 35.93
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GGGCAUUGAUCUUCGAGGCCAGUGUUUGAAGCCAUAGGUGCCCAGUUCCUGAGUCAAGAGCCAGCAGAGCUGACCCAGAGGAAGACAGAGUCCAGCCCCAGGGGUUCUGUAUGCCUGGCA
(((((((...(((((((.......))))))).....))))))).........((((.(.((..(((((((...(((.(.((..(((...)))...)).).))))))))))..))))))).
JBrowse Link: chr17:31,490,921..31,491,040
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,490,961
Ending coordinate (hg38): 31,491,080
Minimum free energy (kcal/mol): -34.8
z-score: -1.17
p-value of z-score: 0.12
Ensemble Diversity: 8.66
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
CACCCAAUAAUCCAGCCAUGAGACCUGAGAUGAAGUAACUGGGCAUUGAUCUUCGAGGCCAGUGUUUGAAGCCAUAGGUGCCCAGUUCCUGAGUCAAGAGCCAGCAGAGCUGACCCAGAG
............((((..((.(..((..(((..((.(((((((((((...(((((((.......))))))).....))))))))))).))..))).))..)...))..))))........
JBrowse Link: chr17:31,490,961..31,491,080
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 31,491,001
Ending coordinate (hg38): 31,491,120
Minimum free energy (kcal/mol): -34.6
z-score: -0.17
p-value of z-score: 0.41
Ensemble Diversity: 26.98
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GCAGGCCUGUCUUGUGGUGCCUAAUUGGUAUGGAUGGGACCACCCAAUAAUCCAGCCAUGAGACCUGAGAUGAAGUAACUGGGCAUUGAUCUUCGAGGCCAGUGUUUGAAGCCAUAGGUG
((.((((((((((((((((((.....))).((((((((....))))....))))))))))))))(.(((((.((((......)).)).))))).)))))).)).......(((...))).
JBrowse Link: chr17:31,491,001..31,491,120
Forna Structure: Visualize MFE with FORNA
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