Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,561
Ending coordinate (hg38): 65,956,680
Minimum free energy (kcal/mol): -9.4
z-score: 0.740
p-value of z-score: 0.77
Ensemble Diversity: 17.38
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUUGUAUCAUUCUUAUGUGUUUGUGUCUUCAUACCUUAGCUCC
....(((((((.....))))))).........((((........((.....))........))))......(((((....((((((..(......)..)).......))))...))))).
JBrowse Link: chr17:65,956,561..65,956,680
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,561
Ending coordinate (hg38): 65,956,680
Minimum free energy (kcal/mol): -9.4
z-score: 0.740
p-value of z-score: 0.77
Ensemble Diversity: 17.38
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
GUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUUGUAUCAUUCUUAUGUGUUUGUGUCUUCAUACCUUAGCUCC
....(((((((.....))))))).........((((........((.....))........))))......(((((....((((((..(......)..)).......))))...))))).
JBrowse Link: chr17:65,956,561..65,956,680
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,601
Ending coordinate (hg38): 65,956,720
Minimum free energy (kcal/mol): -21.6
z-score: -1.42
p-value of z-score: 0.09
Ensemble Diversity: 9.13
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
GUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUU
.........(((((((((((((((((.........).)))))).(((((((.....))))))).......................))))))))))....(((......)))........
JBrowse Link: chr17:65,956,601..65,956,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,601
Ending coordinate (hg38): 65,956,720
Minimum free energy (kcal/mol): -21.6
z-score: -1.42
p-value of z-score: 0.09
Ensemble Diversity: 9.13
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
GUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUU
.........(((((((((((((((((.........).)))))).(((((((.....))))))).......................))))))))))....(((......)))........
JBrowse Link: chr17:65,956,601..65,956,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,601
Ending coordinate (hg38): 65,956,720
Minimum free energy (kcal/mol): -21.6
z-score: -1.42
p-value of z-score: 0.09
Ensemble Diversity: 9.13
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
GUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUU
.........(((((((((((((((((.........).)))))).(((((((.....))))))).......................))))))))))....(((......)))........
JBrowse Link: chr17:65,956,601..65,956,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,601
Ending coordinate (hg38): 65,956,720
Minimum free energy (kcal/mol): -21.6
z-score: -1.42
p-value of z-score: 0.09
Ensemble Diversity: 9.13
Frequency of MFE in ensemble: 0.07
Sequence & Folding Structure:
GUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUCCCCCACCCAAAGUCUUCCCCCUGAGUCCCCAGAGUUUAUU
.........(((((((((((((((((.........).)))))).(((((((.....))))))).......................))))))))))....(((......)))........
JBrowse Link: chr17:65,956,601..65,956,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,641
Ending coordinate (hg38): 65,956,760
Minimum free energy (kcal/mol): -29.3
z-score: -1.57
p-value of z-score: 0.06
Ensemble Diversity: 21.89
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
GCACAGGUGGUGCUUGGUUACAUGAAUAAUUUCUUUAGUGGUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUC
((...(((((((...(((..(((.((.((((((..((((....))))..)))))))).))).))))))))))...))((((...(((((((.....)))))))...........))))..
JBrowse Link: chr17:65,956,641..65,956,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,641
Ending coordinate (hg38): 65,956,760
Minimum free energy (kcal/mol): -29.3
z-score: -1.57
p-value of z-score: 0.06
Ensemble Diversity: 21.89
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
GCACAGGUGGUGCUUGGUUACAUGAAUAAUUUCUUUAGUGGUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUC
((...(((((((...(((..(((.((.((((((..((((....))))..)))))))).))).))))))))))...))((((...(((((((.....)))))))...........))))..
JBrowse Link: chr17:65,956,641..65,956,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,641
Ending coordinate (hg38): 65,956,760
Minimum free energy (kcal/mol): -29.3
z-score: -1.57
p-value of z-score: 0.06
Ensemble Diversity: 21.89
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
GCACAGGUGGUGCUUGGUUACAUGAAUAAUUUCUUUAGUGGUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUC
((...(((((((...(((..(((.((.((((((..((((....))))..)))))))).))).))))))))))...))((((...(((((((.....)))))))...........))))..
JBrowse Link: chr17:65,956,641..65,956,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,956,641
Ending coordinate (hg38): 65,956,760
Minimum free energy (kcal/mol): -29.3
z-score: -1.57
p-value of z-score: 0.06
Ensemble Diversity: 21.89
Frequency of MFE in ensemble: 0.12
Sequence & Folding Structure:
GCACAGGUGGUGCUUGGUUACAUGAAUAAUUUCUUUAGUGGUGAUUACUGAGAUUUUGGUGCACCCAUCACCCUAGCGGUGUAUACUGUAUUCAAUGUAUAGUCUUUUAACCCUCACCUC
((...(((((((...(((..(((.((.((((((..((((....))))..)))))))).))).))))))))))...))((((...(((((((.....)))))))...........))))..
JBrowse Link: chr17:65,956,641..65,956,760
Forna Structure: Visualize MFE with FORNA
CSV