Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,641
Ending coordinate (hg38): 1,551,760
Minimum free energy (kcal/mol): -27
z-score: -1.31
p-value of z-score: 0.09
Ensemble Diversity: 17.12
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGUAGAAGGGACCAAUUGUUUCCUCAAGACUAAGUUGGUCCAA (((((.((((.....((((((..................)))))).....)))))))))..((((((....))))))........(((((((((((((.....))))..))))))))).. JBrowse Link: chr17:1,551,641..1,551,760
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,681
Ending coordinate (hg38): 1,551,800
Minimum free energy (kcal/mol): -22.6
z-score: -0.98
p-value of z-score: 0.12
Ensemble Diversity: 21.44
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
ACCAUCACUCAGUCUCCUCACCAGCACACUUUUUCUCCAUGUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGU ...................((((((.......(((.((((.(((..(((((....((((((..................))))))...)))))))).)))).)))))))))......... JBrowse Link: chr17:1,551,681..1,551,800
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,681
Ending coordinate (hg38): 1,551,800
Minimum free energy (kcal/mol): -22.6
z-score: -0.98
p-value of z-score: 0.12
Ensemble Diversity: 21.44
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
ACCAUCACUCAGUCUCCUCACCAGCACACUUUUUCUCCAUGUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGU ...................((((((.......(((.((((.(((..(((((....((((((..................))))))...)))))))).)))).)))))))))......... JBrowse Link: chr17:1,551,681..1,551,800
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,681
Ending coordinate (hg38): 1,551,800
Minimum free energy (kcal/mol): -22.6
z-score: -0.98
p-value of z-score: 0.12
Ensemble Diversity: 21.44
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
ACCAUCACUCAGUCUCCUCACCAGCACACUUUUUCUCCAUGUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGU ...................((((((.......(((.((((.(((..(((((....((((((..................))))))...)))))))).)))).)))))))))......... JBrowse Link: chr17:1,551,681..1,551,800
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,551,681
Ending coordinate (hg38): 1,551,800
Minimum free energy (kcal/mol): -22.6
z-score: -0.98
p-value of z-score: 0.12
Ensemble Diversity: 21.44
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
ACCAUCACUCAGUCUCCUCACCAGCACACUUUUUCUCCAUGUCUCGUUUUGCUCCUCCUCUGGUAUUUGUAUUUCUUAAAGAGGAUUUUGAAAAGAGAUGGUGAAGUUGGUAUUUUAGGU ...................((((((.......(((.((((.(((..(((((....((((((..................))))))...)))))))).)))).)))))))))......... JBrowse Link: chr17:1,551,681..1,551,800
Forna Structure: Visualize MFE with FORNA |
