Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,921
Ending coordinate (hg38): 48,171,040
Minimum free energy (kcal/mol): -33.5
z-score: -0.47
p-value of z-score: 0.32
Ensemble Diversity: 32.97
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGGCCAAGGAGGGUGGAUCACCUGAUGCCAGGAGUUCAAGACC ((((...((((......))))..((((.(((.(((........)))))))))).........))))....((((((....)))))).((.(((((..((((....)))).)))))...)) JBrowse Link: chr17:48,170,921..48,171,040
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,961
Ending coordinate (hg38): 48,171,080
Minimum free energy (kcal/mol): -29
z-score: -0.55
p-value of z-score: 0.25
Ensemble Diversity: 17.16
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGG ...(((((((.......((((.......))))...((((((...))))))....)))))))..((((.(((.(((........)))))))))).........((((((....)))))).. JBrowse Link: chr17:48,170,961..48,171,080
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,961
Ending coordinate (hg38): 48,171,080
Minimum free energy (kcal/mol): -29
z-score: -0.55
p-value of z-score: 0.25
Ensemble Diversity: 17.16
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGG ...(((((((.......((((.......))))...((((((...))))))....)))))))..((((.(((.(((........)))))))))).........((((((....)))))).. JBrowse Link: chr17:48,170,961..48,171,080
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,961
Ending coordinate (hg38): 48,171,080
Minimum free energy (kcal/mol): -29
z-score: -0.55
p-value of z-score: 0.25
Ensemble Diversity: 17.16
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGG ...(((((((.......((((.......))))...((((((...))))))....)))))))..((((.(((.(((........)))))))))).........((((((....)))))).. JBrowse Link: chr17:48,170,961..48,171,080
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,961
Ending coordinate (hg38): 48,171,080
Minimum free energy (kcal/mol): -29
z-score: -0.55
p-value of z-score: 0.25
Ensemble Diversity: 17.16
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGG ...(((((((.......((((.......))))...((((((...))))))....)))))))..((((.(((.(((........)))))))))).........((((((....)))))).. JBrowse Link: chr17:48,170,961..48,171,080
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,170,961
Ending coordinate (hg38): 48,171,080
Minimum free energy (kcal/mol): -29
z-score: -0.55
p-value of z-score: 0.25
Ensemble Diversity: 17.16
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGGACGCAGUAGCUCACACCUGUAAUCCCAAUACCUUGGGAGG ...(((((((.......((((.......))))...((((((...))))))....)))))))..((((.(((.(((........)))))))))).........((((((....)))))).. JBrowse Link: chr17:48,170,961..48,171,080
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,171,001
Ending coordinate (hg38): 48,171,120
Minimum free energy (kcal/mol): -16.6
z-score: -1.58
p-value of z-score: 0.03
Ensemble Diversity: 24.37
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CUAAAAAAAAAAAAAAAAAAAAAAAAACAACAGUAAUUAAACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGG ...........................((.((((.........(((((((.......((((.......))))...((((((...))))))....)))))))..........))))..)). JBrowse Link: chr17:48,171,001..48,171,120
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,171,001
Ending coordinate (hg38): 48,171,120
Minimum free energy (kcal/mol): -16.6
z-score: -1.58
p-value of z-score: 0.03
Ensemble Diversity: 24.37
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CUAAAAAAAAAAAAAAAAAAAAAAAAACAACAGUAAUUAAACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGG ...........................((.((((.........(((((((.......((((.......))))...((((((...))))))....)))))))..........))))..)). JBrowse Link: chr17:48,171,001..48,171,120
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,171,001
Ending coordinate (hg38): 48,171,120
Minimum free energy (kcal/mol): -16.6
z-score: -1.58
p-value of z-score: 0.03
Ensemble Diversity: 24.37
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CUAAAAAAAAAAAAAAAAAAAAAAAAACAACAGUAAUUAAACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGG ...........................((.((((.........(((((((.......((((.......))))...((((((...))))))....)))))))..........))))..)). JBrowse Link: chr17:48,171,001..48,171,120
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 48,171,001
Ending coordinate (hg38): 48,171,120
Minimum free energy (kcal/mol): -16.6
z-score: -1.58
p-value of z-score: 0.03
Ensemble Diversity: 24.37
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CUAAAAAAAAAAAAAAAAAAAAAAAAACAACAGUAAUUAAACUUUCCUUAAAGAAGAGAGUAUGAUGAGCUCAGAGAAAGGGGACCUUUCCGUAUAAGGAACAUGAGACUGACUGGCUGG ...........................((.((((.........(((((((.......((((.......))))...((((((...))))))....)))))))..........))))..)). JBrowse Link: chr17:48,171,001..48,171,120
Forna Structure: Visualize MFE with FORNA |
