Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,241
Ending coordinate (hg38): 1,550,360
Minimum free energy (kcal/mol): -32.7
z-score: 0.030
p-value of z-score: 0.51
Ensemble Diversity: 30.39
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGCAUUAUGGCAUGAACUUACAGUGUUGUGCUUGGCCUUGUCU .((((.(((.((.((..((((((((((((......((((....))))((((...(((......)))...))))............))))))......)))))))).))..))).)))).. JBrowse Link: chr17:1,550,241..1,550,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,241
Ending coordinate (hg38): 1,550,360
Minimum free energy (kcal/mol): -32.7
z-score: 0.030
p-value of z-score: 0.51
Ensemble Diversity: 30.39
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGCAUUAUGGCAUGAACUUACAGUGUUGUGCUUGGCCUUGUCU .((((.(((.((.((..((((((((((((......((((....))))((((...(((......)))...))))............))))))......)))))))).))..))).)))).. JBrowse Link: chr17:1,550,241..1,550,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,241
Ending coordinate (hg38): 1,550,360
Minimum free energy (kcal/mol): -32.7
z-score: 0.030
p-value of z-score: 0.51
Ensemble Diversity: 30.39
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGCAUUAUGGCAUGAACUUACAGUGUUGUGCUUGGCCUUGUCU .((((.(((.((.((..((((((((((((......((((....))))((((...(((......)))...))))............))))))......)))))))).))..))).)))).. JBrowse Link: chr17:1,550,241..1,550,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,241
Ending coordinate (hg38): 1,550,360
Minimum free energy (kcal/mol): -32.7
z-score: 0.030
p-value of z-score: 0.51
Ensemble Diversity: 30.39
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGCAUUAUGGCAUGAACUUACAGUGUUGUGCUUGGCCUUGUCU .((((.(((.((.((..((((((((((((......((((....))))((((...(((......)))...))))............))))))......)))))))).))..))).)))).. JBrowse Link: chr17:1,550,241..1,550,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,241
Ending coordinate (hg38): 1,550,360
Minimum free energy (kcal/mol): -32.7
z-score: 0.030
p-value of z-score: 0.51
Ensemble Diversity: 30.39
Frequency of MFE in ensemble: 0.03
Sequence & Folding Structure:
CGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGCAUUAUGGCAUGAACUUACAGUGUUGUGCUUGGCCUUGUCU .((((.(((.((.((..((((((((((((......((((....))))((((...(((......)))...))))............))))))......)))))))).))..))).)))).. JBrowse Link: chr17:1,550,241..1,550,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,281
Ending coordinate (hg38): 1,550,400
Minimum free energy (kcal/mol): -25.1
z-score: 0.485
p-value of z-score: 0.7
Ensemble Diversity: 36.88
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CCACUCAUUGUCCCAUGUGUUGGUUCAUCCUGACUUUCCUCGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGC ....(((.((..(((.....)))..))...))).......(((((.((((....((((...(((...........((((....)))))))...)))).....)))).)))))........ JBrowse Link: chr17:1,550,281..1,550,400
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,281
Ending coordinate (hg38): 1,550,400
Minimum free energy (kcal/mol): -25.1
z-score: 0.485
p-value of z-score: 0.7
Ensemble Diversity: 36.88
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CCACUCAUUGUCCCAUGUGUUGGUUCAUCCUGACUUUCCUCGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGC ....(((.((..(((.....)))..))...))).......(((((.((((....((((...(((...........((((....)))))))...)))).....)))).)))))........ JBrowse Link: chr17:1,550,281..1,550,400
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,281
Ending coordinate (hg38): 1,550,400
Minimum free energy (kcal/mol): -25.1
z-score: 0.485
p-value of z-score: 0.7
Ensemble Diversity: 36.88
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CCACUCAUUGUCCCAUGUGUUGGUUCAUCCUGACUUUCCUCGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGC ....(((.((..(((.....)))..))...))).......(((((.((((....((((...(((...........((((....)))))))...)))).....)))).)))))........ JBrowse Link: chr17:1,550,281..1,550,400
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,281
Ending coordinate (hg38): 1,550,400
Minimum free energy (kcal/mol): -25.1
z-score: 0.485
p-value of z-score: 0.7
Ensemble Diversity: 36.88
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CCACUCAUUGUCCCAUGUGUUGGUUCAUCCUGACUUUCCUCGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGC ....(((.((..(((.....)))..))...))).......(((((.((((....((((...(((...........((((....)))))))...)))).....)))).)))))........ JBrowse Link: chr17:1,550,281..1,550,400
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 1,550,281
Ending coordinate (hg38): 1,550,400
Minimum free energy (kcal/mol): -25.1
z-score: 0.485
p-value of z-score: 0.7
Ensemble Diversity: 36.88
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CCACUCAUUGUCCCAUGUGUUGGUUCAUCCUGACUUUCCUCGCAGAGCCUGCCCGGUGCACUGCAUGUCCCCCACUGUGUUCUCACAGCACUCCGCCACCCAGGGCCCUGUGCCCACCGC ....(((.((..(((.....)))..))...))).......(((((.((((....((((...(((...........((((....)))))))...)))).....)))).)))))........ JBrowse Link: chr17:1,550,281..1,550,400
Forna Structure: Visualize MFE with FORNA |
