Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,841
Ending coordinate (hg38): 10,005,960
Minimum free energy (kcal/mol): -26.4
z-score: 0.608
p-value of z-score: 0.7
Ensemble Diversity: 20.86
Frequency of MFE in ensemble: 0.04
Sequence & Folding Structure:
CAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAAAAGUGCUGGUCUGUGAUUACUGGACUCCUAGGGAAAUGGC (((((((......((((((.....)))))).....((((...(((((((.((.(((..........))).)))))))))...)))))))))))......((((....))))......... JBrowse Link: chr17:10,005,841..10,005,960
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,841
Ending coordinate (hg38): 10,005,960
Minimum free energy (kcal/mol): -26.4
z-score: 0.608
p-value of z-score: 0.7
Ensemble Diversity: 20.86
Frequency of MFE in ensemble: 0.04
Sequence & Folding Structure:
CAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAAAAGUGCUGGUCUGUGAUUACUGGACUCCUAGGGAAAUGGC (((((((......((((((.....)))))).....((((...(((((((.((.(((..........))).)))))))))...)))))))))))......((((....))))......... JBrowse Link: chr17:10,005,841..10,005,960
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,841
Ending coordinate (hg38): 10,005,960
Minimum free energy (kcal/mol): -26.4
z-score: 0.608
p-value of z-score: 0.7
Ensemble Diversity: 20.86
Frequency of MFE in ensemble: 0.04
Sequence & Folding Structure:
CAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAAAAGUGCUGGUCUGUGAUUACUGGACUCCUAGGGAAAUGGC (((((((......((((((.....)))))).....((((...(((((((.((.(((..........))).)))))))))...)))))))))))......((((....))))......... JBrowse Link: chr17:10,005,841..10,005,960
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,841
Ending coordinate (hg38): 10,005,960
Minimum free energy (kcal/mol): -26.4
z-score: 0.608
p-value of z-score: 0.7
Ensemble Diversity: 20.86
Frequency of MFE in ensemble: 0.04
Sequence & Folding Structure:
CAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAAAAGUGCUGGUCUGUGAUUACUGGACUCCUAGGGAAAUGGC (((((((......((((((.....)))))).....((((...(((((((.((.(((..........))).)))))))))...)))))))))))......((((....))))......... JBrowse Link: chr17:10,005,841..10,005,960
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,841
Ending coordinate (hg38): 10,005,960
Minimum free energy (kcal/mol): -26.4
z-score: 0.608
p-value of z-score: 0.7
Ensemble Diversity: 20.86
Frequency of MFE in ensemble: 0.04
Sequence & Folding Structure:
CAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAAAAGUGCUGGUCUGUGAUUACUGGACUCCUAGGGAAAUGGC (((((((......((((((.....)))))).....((((...(((((((.((.(((..........))).)))))))))...)))))))))))......((((....))))......... JBrowse Link: chr17:10,005,841..10,005,960
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,881
Ending coordinate (hg38): 10,006,000
Minimum free energy (kcal/mol): -23.3
z-score: -0.75
p-value of z-score: 0.19
Ensemble Diversity: 8.82
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUCUCUACCAGUCAUUAGAUCAACCAGUACUCGUUAAUUACAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAA .........(((..(((((((((.(((...(((((......(((....(.((.((((((.....)))))).)).)...)))......)))))...))).))))))))))))......... JBrowse Link: chr17:10,005,881..10,006,000
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,881
Ending coordinate (hg38): 10,006,000
Minimum free energy (kcal/mol): -23.3
z-score: -0.75
p-value of z-score: 0.19
Ensemble Diversity: 8.82
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUCUCUACCAGUCAUUAGAUCAACCAGUACUCGUUAAUUACAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAA .........(((..(((((((((.(((...(((((......(((....(.((.((((((.....)))))).)).)...)))......)))))...))).))))))))))))......... JBrowse Link: chr17:10,005,881..10,006,000
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,881
Ending coordinate (hg38): 10,006,000
Minimum free energy (kcal/mol): -23.3
z-score: -0.75
p-value of z-score: 0.19
Ensemble Diversity: 8.82
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUCUCUACCAGUCAUUAGAUCAACCAGUACUCGUUAAUUACAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAA .........(((..(((((((((.(((...(((((......(((....(.((.((((((.....)))))).)).)...)))......)))))...))).))))))))))))......... JBrowse Link: chr17:10,005,881..10,006,000
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,881
Ending coordinate (hg38): 10,006,000
Minimum free energy (kcal/mol): -23.3
z-score: -0.75
p-value of z-score: 0.19
Ensemble Diversity: 8.82
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUCUCUACCAGUCAUUAGAUCAACCAGUACUCGUUAAUUACAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAA .........(((..(((((((((.(((...(((((......(((....(.((.((((((.....)))))).)).)...)))......)))))...))).))))))))))))......... JBrowse Link: chr17:10,005,881..10,006,000
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 10,005,881
Ending coordinate (hg38): 10,006,000
Minimum free energy (kcal/mol): -23.3
z-score: -0.75
p-value of z-score: 0.19
Ensemble Diversity: 8.82
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUCUCUACCAGUCAUUAGAUCAACCAGUACUCGUUAAUUACAGGCCAAAGGAAGUACAGGUCCACUGUGCAUUGUGUACCUAUCAGGAAUGACUUUUGCUUGAUUUGAACUCUUUUUGAA .........(((..(((((((((.(((...(((((......(((....(.((.((((((.....)))))).)).)...)))......)))))...))).))))))))))))......... JBrowse Link: chr17:10,005,881..10,006,000
Forna Structure: Visualize MFE with FORNA |
