Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,361
Ending coordinate (hg38): 65,682,480
Minimum free energy (kcal/mol): -12.2
z-score: 1.393
p-value of z-score: 0.9
Ensemble Diversity: 30.2
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAAAUUCACAUCACUGGUCACAAGAGAAAUACGGAAGGCUUGA ...............(((((((((....))...((((.........(((((((.((((........))))....)))....))))))))))))))).((((..............)))). JBrowse Link: chr17:65,682,361..65,682,480
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,361
Ending coordinate (hg38): 65,682,480
Minimum free energy (kcal/mol): -12.2
z-score: 1.393
p-value of z-score: 0.9
Ensemble Diversity: 30.2
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAAAUUCACAUCACUGGUCACAAGAGAAAUACGGAAGGCUUGA ...............(((((((((....))...((((.........(((((((.((((........))))....)))....))))))))))))))).((((..............)))). JBrowse Link: chr17:65,682,361..65,682,480
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,361
Ending coordinate (hg38): 65,682,480
Minimum free energy (kcal/mol): -12.2
z-score: 1.393
p-value of z-score: 0.9
Ensemble Diversity: 30.2
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAAAUUCACAUCACUGGUCACAAGAGAAAUACGGAAGGCUUGA ...............(((((((((....))...((((.........(((((((.((((........))))....)))....))))))))))))))).((((..............)))). JBrowse Link: chr17:65,682,361..65,682,480
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,361
Ending coordinate (hg38): 65,682,480
Minimum free energy (kcal/mol): -12.2
z-score: 1.393
p-value of z-score: 0.9
Ensemble Diversity: 30.2
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAAAUUCACAUCACUGGUCACAAGAGAAAUACGGAAGGCUUGA ...............(((((((((....))...((((.........(((((((.((((........))))....)))....))))))))))))))).((((..............)))). JBrowse Link: chr17:65,682,361..65,682,480
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,361
Ending coordinate (hg38): 65,682,480
Minimum free energy (kcal/mol): -12.2
z-score: 1.393
p-value of z-score: 0.9
Ensemble Diversity: 30.2
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAAAUUCACAUCACUGGUCACAAGAGAAAUACGGAAGGCUUGA ...............(((((((((....))...((((.........(((((((.((((........))))....)))....))))))))))))))).((((..............)))). JBrowse Link: chr17:65,682,361..65,682,480
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,401
Ending coordinate (hg38): 65,682,520
Minimum free energy (kcal/mol): -24.2
z-score: -0.71
p-value of z-score: 0.22
Ensemble Diversity: 24.83
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGGGACUUUUUCUUUGCUGGGGAGUGCUAGAUGACUGAGGUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAA ...(..(.((((((((((((((..(((....(((((....)))))....))).........)))))))))))))).)..)..........(((.((((........))))....)))... JBrowse Link: chr17:65,682,401..65,682,520
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,401
Ending coordinate (hg38): 65,682,520
Minimum free energy (kcal/mol): -24.2
z-score: -0.71
p-value of z-score: 0.22
Ensemble Diversity: 24.83
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGGGACUUUUUCUUUGCUGGGGAGUGCUAGAUGACUGAGGUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAA ...(..(.((((((((((((((..(((....(((((....)))))....))).........)))))))))))))).)..)..........(((.((((........))))....)))... JBrowse Link: chr17:65,682,401..65,682,520
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,401
Ending coordinate (hg38): 65,682,520
Minimum free energy (kcal/mol): -24.2
z-score: -0.71
p-value of z-score: 0.22
Ensemble Diversity: 24.83
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGGGACUUUUUCUUUGCUGGGGAGUGCUAGAUGACUGAGGUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAA ...(..(.((((((((((((((..(((....(((((....)))))....))).........)))))))))))))).)..)..........(((.((((........))))....)))... JBrowse Link: chr17:65,682,401..65,682,520
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,401
Ending coordinate (hg38): 65,682,520
Minimum free energy (kcal/mol): -24.2
z-score: -0.71
p-value of z-score: 0.22
Ensemble Diversity: 24.83
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGGGACUUUUUCUUUGCUGGGGAGUGCUAGAUGACUGAGGUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAA ...(..(.((((((((((((((..(((....(((((....)))))....))).........)))))))))))))).)..)..........(((.((((........))))....)))... JBrowse Link: chr17:65,682,401..65,682,520
Forna Structure: Visualize MFE with FORNA |
|
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 65,682,401
Ending coordinate (hg38): 65,682,520
Minimum free energy (kcal/mol): -24.2
z-score: -0.71
p-value of z-score: 0.22
Ensemble Diversity: 24.83
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GGGGGACUUUUUCUUUGCUGGGGAGUGCUAGAUGACUGAGGUUAUAUUUUACAAAGAUUAGUCCAGCAGGGAAGAUGAACAAGAAAUGAAAGGAGACCAAUUCAGAGGUUAUGGCCUAAA ...(..(.((((((((((((((..(((....(((((....)))))....))).........)))))))))))))).)..)..........(((.((((........))))....)))... JBrowse Link: chr17:65,682,401..65,682,520
Forna Structure: Visualize MFE with FORNA |
