Data Search

Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).

You can browse the data visually using JBrowse - user guide here.

If you would like to find data for specific genes use the Gene Search tool.

Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.

Download your results by clicking the "CSV" download button at the bottom of the page.

Select data from a specific chromosome.
Data export restricted to 2.5M nucleotides at a time.
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,561
Ending coordinate (hg38): 80,751,680
Minimum free energy (kcal/mol): -26.5
z-score: 1.219
p-value of z-score: 0.93
Ensemble Diversity: 40.91
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AAGAGGAGGCGCUAUUGUAAAUGAAUAUUGUAAGUGACGAUGAAUAUGGGUGGGGGUGAGAUGUGUCCAGAGUGUGUGGCUUUUAAUCACCGAGGGCUGCGAUGCGCUCCCCGGCUUGAC
....((.(((((.(((((.......((((((.....))))))......(((...(((((.....(((((.....)).)))......)))))....))))))))))))).)).........
JBrowse Link: chr17:80,751,561..80,751,680
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,601
Ending coordinate (hg38): 80,751,720
Minimum free energy (kcal/mol): -27.5
z-score: 0.203
p-value of z-score: 0.58
Ensemble Diversity: 27.86
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
AGAUCACUUUUGUUUACUCAGACUGUGGCAGGCCUCCAUGAAGAGGAGGCGCUAUUGUAAAUGAAUAUUGUAAGUGACGAUGAAUAUGGGUGGGGGUGAGAUGUGUCCAGAGUGUGUGGC
.((((((((.(.((((((((.((.(((((..((((((.......))))))))))).)).......((((((.....))))))....)))))))).).))).)).))).............
JBrowse Link: chr17:80,751,601..80,751,720
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,641
Ending coordinate (hg38): 80,751,760
Minimum free energy (kcal/mol): -32.4
z-score: -1.38
p-value of z-score: 0.06
Ensemble Diversity: 11.5
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
CACAAUUCCUAGGGCUUGUUUUGUGAAUACCACAGGGACAAGAUCACUUUUGUUUACUCAGACUGUGGCAGGCCUCCAUGAAGAGGAGGCGCUAUUGUAAAUGAAUAUUGUAAGUGACGA
..............(((((((((((.....)))).))))))).((((((.....((.(((.((.(((((..((((((.......))))))))))).))...))).))....))))))...
JBrowse Link: chr17:80,751,641..80,751,760
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,681
Ending coordinate (hg38): 80,751,800
Minimum free energy (kcal/mol): -31
z-score: -0.67
p-value of z-score: 0.22
Ensemble Diversity: 18.68
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUCGUCCCAGAUCCAGGGCCUGGACGCUGUUUGUGACUUACACAAUUCCUAGGGCUUGUUUUGUGAAUACCACAGGGACAAGAUCACUUUUGUUUACUCAGACUGUGGCAGGCCUCCAUG
(((......)))...(((((((..(((.(((((.(...((.((((.......(((((((((((((.....)))).))))))).))....)))).))).))))).))).))))))).....
JBrowse Link: chr17:80,751,681..80,751,800
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,721
Ending coordinate (hg38): 80,751,840
Minimum free energy (kcal/mol): -35.3
z-score: 0.137
p-value of z-score: 0.48
Ensemble Diversity: 12.15
Frequency of MFE in ensemble: 0.06
Sequence & Folding Structure:
CGGUCAGCAUGAGGGCUGGAGCAUCGCAUGACAGAGACUGGUCGUCCCAGAUCCAGGGCCUGGACGCUGUUUGUGACUUACACAAUUCCUAGGGCUUGUUUUGUGAAUACCACAGGGACA
(((((.(((((.((((....)).)).)))).)...)))))...(((((.....((((.(((((.......(((((.....)))))...))))).))))...((((.....))))))))).
JBrowse Link: chr17:80,751,721..80,751,840
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,761
Ending coordinate (hg38): 80,751,880
Minimum free energy (kcal/mol): -40.7
z-score: -0.06
p-value of z-score: 0.41
Ensemble Diversity: 29.27
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACUGAGAGCGCCACCUGCUAAUGCGGGGUCGUGGACCAAGCGGUCAGCAUGAGGGCUGGAGCAUCGCAUGACAGAGACUGGUCGUCCCAGAUCCAGGGCCUGGACGCUGUUUGUGACUUA
((.((.((((((((((((....)))))((((((((....((..(((((......))))).)).)).)))))).....((((((......)).))))....))).)))).)).))......
JBrowse Link: chr17:80,751,761..80,751,880
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,801
Ending coordinate (hg38): 80,751,920
Minimum free energy (kcal/mol): -31.2
z-score: 0.966
p-value of z-score: 0.8
Ensemble Diversity: 41.35
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
CUGGGGAUGUGGAACAACAAGGUACAGAAUGAGGCUUCAGACUGAGAGCGCCACCUGCUAAUGCGGGGUCGUGGACCAAGCGGUCAGCAUGAGGGCUGGAGCAUCGCAUGACAGAGACUG
(((....(((......))).....))).....((((((.......))).))).(((((....)))))((((((((....((..(((((......))))).)).)).))))))........
JBrowse Link: chr17:80,751,801..80,751,920
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,841
Ending coordinate (hg38): 80,751,960
Minimum free energy (kcal/mol): -35.4
z-score: 0.478
p-value of z-score: 0.61
Ensemble Diversity: 41.48
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
GCAUUCUGCUGUAGGGGCCAACCUCAUCUGCCCAUCUAGGCUGGGGAUGUGGAACAACAAGGUACAGAAUGAGGCUUCAGACUGAGAGCGCCACCUGCUAAUGCGGGGUCGUGGACCAAG
.(((((((((....(..(((.(((((...(((......))))))))...)))..)....))...))))))).((((((.......))).)))..((((....))))((((...))))...
JBrowse Link: chr17:80,751,841..80,751,960
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,881
Ending coordinate (hg38): 80,752,000
Minimum free energy (kcal/mol): -26.7
z-score: 0.171
p-value of z-score: 0.48
Ensemble Diversity: 41.3
Frequency of MFE in ensemble: 0.05
Sequence & Folding Structure:
CACGUGUCUACAAAUACCUAUAAUUCGGCUGUAAUGGAAAGCAUUCUGCUGUAGGGGCCAACCUCAUCUGCCCAUCUAGGCUGGGGAUGUGGAACAACAAGGUACAGAAUGAGGCUUCAG
...((.((......(((((......((((.(.((((.....))))).))))...(..(((.(((((...(((......))))))))...)))..)....)))))......)).)).....
JBrowse Link: chr17:80,751,881..80,752,000
Forna Structure: Visualize MFE with FORNA
Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 80,751,921
Ending coordinate (hg38): 80,752,040
Minimum free energy (kcal/mol): -22.2
z-score: 0.618
p-value of z-score: 0.67
Ensemble Diversity: 23.2
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
CGAUCAUACCGGGCCACACAGCUUGCAGAACUCCUUCAUUCACGUGUCUACAAAUACCUAUAAUUCGGCUGUAAUGGAAAGCAUUCUGCUGUAGGGGCCAACCUCAUCUGCCCAUCUAGG
..........((((......((..((((((....((((((.(((.(((..................)))))))))))).....)))))).)).((((....))))....)))).......
JBrowse Link: chr17:80,751,921..80,752,040
Forna Structure: Visualize MFE with FORNA
CSV