Data Search
Find folding metrics (explained here) within the human reference genome (GRCh38/hg38) based on their genomic coordinates, or find specific regions which have interesting folding properties (by filtering based on their folding metric values).
You can browse the data visually using JBrowse - user guide here.
If you would like to find data for specific genes use the Gene Search tool.
Users are limited to downloading about 2.5 million nucleotides worth of a data at a time. If you would like the entire data set it can be found here.
Download your results by clicking the "CSV" download button at the bottom of the page.
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,161
Ending coordinate (hg38): 3,628,280
Minimum free energy (kcal/mol): -19.4
z-score: 0.910
p-value of z-score: 0.77
Ensemble Diversity: 39.060000000000002
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGAUGGACGGCUACUUUGGGGGGCUGUAGUUAUGAGGAUUUCA (((.((((.....)))))))...................(((((..(((...(((((((..(..((.....(((.(........).)))....))..)..))))))).)))..))))).. JBrowse Link: chr17:3,628,161..3,628,280
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,161
Ending coordinate (hg38): 3,628,280
Minimum free energy (kcal/mol): -19.4
z-score: 0.910
p-value of z-score: 0.77
Ensemble Diversity: 39.060000000000002
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGAUGGACGGCUACUUUGGGGGGCUGUAGUUAUGAGGAUUUCA (((.((((.....)))))))...................(((((..(((...(((((((..(..((.....(((.(........).)))....))..)..))))))).)))..))))).. JBrowse Link: chr17:3,628,161..3,628,280
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,161
Ending coordinate (hg38): 3,628,280
Minimum free energy (kcal/mol): -19.4
z-score: 0.910
p-value of z-score: 0.77
Ensemble Diversity: 39.060000000000002
Frequency of MFE in ensemble: 0
Sequence & Folding Structure:
GUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGAUGGACGGCUACUUUGGGGGGCUGUAGUUAUGAGGAUUUCA (((.((((.....)))))))...................(((((..(((...(((((((..(..((.....(((.(........).)))....))..)..))))))).)))..))))).. JBrowse Link: chr17:3,628,161..3,628,280
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,201
Ending coordinate (hg38): 3,628,320
Minimum free energy (kcal/mol): -5.9
z-score: 1.399
p-value of z-score: 0.9
Ensemble Diversity: 27.68
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGA ...............................(((.((...(((.((((.....)))))))...)).))).((((....(((((....((((......))))....)))))))))...... JBrowse Link: chr17:3,628,201..3,628,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,201
Ending coordinate (hg38): 3,628,320
Minimum free energy (kcal/mol): -5.9
z-score: 1.399
p-value of z-score: 0.9
Ensemble Diversity: 27.68
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGA ...............................(((.((...(((.((((.....)))))))...)).))).((((....(((((....((((......))))....)))))))))...... JBrowse Link: chr17:3,628,201..3,628,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,201
Ending coordinate (hg38): 3,628,320
Minimum free energy (kcal/mol): -5.9
z-score: 1.399
p-value of z-score: 0.9
Ensemble Diversity: 27.68
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGA ...............................(((.((...(((.((((.....)))))))...)).))).((((....(((((....((((......))))....)))))))))...... JBrowse Link: chr17:3,628,201..3,628,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,201
Ending coordinate (hg38): 3,628,320
Minimum free energy (kcal/mol): -5.9
z-score: 1.399
p-value of z-score: 0.9
Ensemble Diversity: 27.68
Frequency of MFE in ensemble: 0.02
Sequence & Folding Structure:
AUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAAAAUCAACAUUUUACUACAGAUCAACAUUUUAAGCAGAAGA ...............................(((.((...(((.((((.....)))))))...)).))).((((....(((((....((((......))))....)))))))))...... JBrowse Link: chr17:3,628,201..3,628,320
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,241
Ending coordinate (hg38): 3,628,360
Minimum free energy (kcal/mol): -7
z-score: 0.750
p-value of z-score: 0.7
Ensemble Diversity: 27.5
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACAGAACAAGACUUCGUCUCAAAAAAAAAAAAAAGAAAUUAUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAA ((((.((.....(((.((((...............((((((.........))))))...............)))))))..)).))))....(((................)))....... JBrowse Link: chr17:3,628,241..3,628,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,241
Ending coordinate (hg38): 3,628,360
Minimum free energy (kcal/mol): -7
z-score: 0.750
p-value of z-score: 0.7
Ensemble Diversity: 27.5
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACAGAACAAGACUUCGUCUCAAAAAAAAAAAAAAGAAAUUAUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAA ((((.((.....(((.((((...............((((((.........))))))...............)))))))..)).))))....(((................)))....... JBrowse Link: chr17:3,628,241..3,628,360
Forna Structure: Visualize MFE with FORNA |
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Chromosome: chr17
Strandedness: -1
Starting coordinate (hg38): 3,628,241
Ending coordinate (hg38): 3,628,360
Minimum free energy (kcal/mol): -7
z-score: 0.750
p-value of z-score: 0.7
Ensemble Diversity: 27.5
Frequency of MFE in ensemble: 0.01
Sequence & Folding Structure:
ACAGAACAAGACUUCGUCUCAAAAAAAAAAAAAAGAAAUUAUGAAAGAUUUAAUUUAGACAAACAAAAAUAGGGAGAACAGUACUGUGAACAGCAUAUACCCAUCACUCAGCUUCAACAA ((((.((.....(((.((((...............((((((.........))))))...............)))))))..)).))))....(((................)))....... JBrowse Link: chr17:3,628,241..3,628,360
Forna Structure: Visualize MFE with FORNA |
