ENST00000542790.1, ENST00000542790.1 (transcript) Homo sapiens

Feature
Overview
NameENST00000542790.1
Unique NameENST00000542790.1
Typetranscript
OrganismHomo sapiens (Human)
Sequence length1133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12chromosomechr12:122249616..122251685 -
Analyses
This transcript is derived from or has results from the following analyses
Analysis NameDate Performed
FASTA Sequence - Transcripts2017-03-29
Gencode Annotation2017-03-01
Properties
Property NameValue
Gene idENSG00000139719.9
Transcript idENST00000542790.1
Gene typeprotein_coding
Gene nameVPS33A
Transcript typeretained_intron
Transcript nameVPS33A-006
Level2
Transcript support level3
Havana geneOTTHUMG00000168920.3
Havana transcriptOTTHUMT00000401613.1
Relationships

This transcript is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ENSG00000139719.9ENSG00000139719.9Homo sapiensgene


The following exon feature(s) are a part of this transcript:

Feature NameUnique NameSpeciesType
exon:ENST00000542790.1:2exon:ENST00000542790.1:2Homo sapiensexon
exon:ENST00000542790.1:1exon:ENST00000542790.1:1Homo sapiensexon


Sequences
The following sequences are available for this feature:

transcript sequence

>ENST00000542790.1 ID=ENST00000542790.1|Name=ENST00000542790.1|organism=Homo sapiens|type=transcript|length=1133bp
TTGTTTTTTTGTCCTTGTGATAGTTTGCTGAGTTGGAGGTCCTTTTTTCA
ATGCAAAAATATATATTTTTTATAAAATGAGATCATACTCAACAGATTGT
GGCCTTCAGTTGTCAGTTGTCATGAAAATCTGCCTCATCCTTTTTGAAAA
CAATAAAGTATTCGTCCTGTGGTCTTTTGCATTTCTGGGTATTAGCATGT
CGCTCTCCCAGCATGTCCTACCAGAGTTTACTCTCACCAGTGAATGGGAA
CCCATCGTTCAGTGTAAGTCTGTATTCTTCCGTCTTTTATTTAAGAGCTG
ATTCAGAAGAGCTGGCATGCTGGGTGAACAGTTTTCTCCCAGAAGCCCCG
GCTCTGCCCAGGAGAGGTGCTTCCACGGCTGCACCCACCCTGGGGCTGCC
AGCCTCAGCGCCTGGTCTGACAGGCAGCAGTTTTGGAAAATGAACTTGAG
TCCCCAATTTTCCTGGCACAGTGTGAAATAACTGGAAATGATTTTATTGT
CTGTCGCTGCACCCCAGCCCCAGGAACAGAGATGGGCCCCTGGGAGGCCC
CCATGGCCTGGCAATAATTGGCCTTTTCCCTCACAGGAGTGCTACCTGGA
GGGTGACCAGACGAGCCTGTACCACGCAGCCAAGGGGCTGATGACCCTGC
AAGCTCTGTATGGAACGATCCCCCAGATCTTTGGGAAAGGAGAATGCGCT
CGGCAAGTGGCCAATATGATGATCAGGATGAAGAGAGAGTTTACAGGAAG
CCAGAATTCAATATTTCCTGTTTTTGATAATCTCTTGTTGCTTGATCGGA
ATGTGGATTTATTAACACCTCTTGCCACTCAGCTGACATATGAAGGACTC
ATTGATGAAATTTATGGCATTCAGAACAGTAAGTACATGACATCTGTTTT
CACTAATAGGTAATATGAGAAGAATATCCTTTGTGGAGGCTACTGTTTGT
ATATTGCACACTTAAGCATAATTTAAAGTCAGAGATCCGATTTTAATGAT
TCAGAGTGTAGATTAATACAGACCTTTTTGTAAGCAATTTAGCAACACAT
AAAACTTTTCTAACCCTTGGCCAAAGAAAACCCAAAGCCTAAGAATGTGC
CTTGAGGAATCATTCCAAAAAAGAGGATCAGTG
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transcript from alignment at chr12:122249616..122251685-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ENST00000542790.1 ID=ENST00000542790.1|Name=ENST00000542790.1|organism=Homo sapiens|type=transcript|length=2070bp|location=Sequence derived from alignment at chr12:122249616..122251685- (Homo sapiens)
TTGTTTTTTTGTCCTTGTGATAGTTTGCTGAGTTGGAGGTCCTTTTTTCA
ATGCAAAAATATATATTTTTTATAAAATGAGATCATACTCAACAGATTGT
GGCCTTCAGTTGTCAGTTGTCATGAAAATCTGCCTCATCCTTTTTGAAAA
CAATAAAGTATTCGTCCTGTGGTCTTTTGCATTTCTGGGTATTAGCATGT
CGCTCTCCCAGCATGTCCTACCAGAGTTTACTCTCACCAGTGAATGGGAA
CCCATCGTTCAGTGTAAGTCTGTATTCTTCCGTCTTTTATTTAAGAGCTG
ATTCAGAAGAGCTGGCATGCTGGGTGAACAGTTTTCTCCCAGAAGCCCCG
GCTCTGCCCAGGAGAGGTGCTTCCACGGCTGCACCCACCCTGGGGCTGCC
AGCCTCAGCGCCTGGTCTGACAGGCAGCAGTTTTGGAAAATGAACTTGAG
TCCCCAATTTTCCTGGCACAGTGTGAAATAACTGGAAATGATTTTATTGT
CTGTCGCTGCACCCCAGCCCCAGGAACAGAGATGGGCCCCTGGGAGGCCC
CCATGGCCTGGCAATAATTGGCCTTTTCCCTCACAGGAGTGCTACCTGGA
GGGTGACCAGACGAGCCTGTACCACGCAGCCAAGGGGCTGATGACCCTGC
AAGCTCTGTATGGAACGATCCCCCAGATCTTTGGGAAAGGAGAATGCGCT
CGGGTGAGAACCGGCTGCTTTGTGGTGGTAAAGGAGGGCCCTTCACACCC
CAAAAGGGAGGAGGAACGGGAAGCTCCTTACAAACAAATTCAGTTGATCT
TAATTATTTATGAATACTGTACTCATGAATTTGCCTACTGATTAAAATGC
ACTTATAACCCTCCAAGTCAGTACTCATGGTGCTTTTGTCGGCGTGCACA
GTGGTGACAGTTTGAGTAACCACTGCGCATGTTCCCAACTGAGGCAGCTG
ACACTCCACCTTCCCATTTCAGCTCTCAGACTGCAAACAAGTGTACTTTT
CACAGTCTCACTGTCATATTTTCCACACGTGTGTACTTTTTTTGGTGATT
TCACTGTTTAAAATGGCCTGCAAATGTAGGACTGAGGTGCAGTCGGGTGT
CTTGTGCACAAGAAGGCTGTGGTGTGCCTGGCGGAGACATTACGTGTGTC
AGAGACGCTTCGTTCAGGCACGAGTCACAGAGCTGCTGGCTGTCAGTTCA
GTGTGAGTGATCAACAATTATGTTAAGTCAGGCATCTTTAAGCAGAAACA
CATATAAAACTGGGTTACGTATTGATCAATTGACAGAAACGTTGAGACCA
GAGGCTCCCAGGAACCTAAGTCTGCGTTTCTCCTAGGAACAGTGGTTCCA
TCTTCGCTAATTTAGTGTTTGCAGTGACTTCATAGAACATAACTACTGCG
AATCACAAGAATAGACTGACCTGATTTTATGCCTCATTGGCAAATGGCAG
CTGCCTTGGTGCAAGTGTCGGGATGGGTGCCAACAGCAAGGTGCTTTTCT
AGAGCTGCTTATTTCTAAGCAATGCACTCTTCCAGTTTTTCTCCTTTTTT
ACTTTTTTGATTGTCTTTCTGGTTTTAGACAAATTTTAAAATCTGCTTGT
TCCCAGGGGGGCCCCACCTCATCCAATGTTTTGTTTCCAGCAAGTGGCCA
ATATGATGATCAGGATGAAGAGAGAGTTTACAGGAAGCCAGAATTCAATA
TTTCCTGTTTTTGATAATCTCTTGTTGCTTGATCGGAATGTGGATTTATT
AACACCTCTTGCCACTCAGCTGACATATGAAGGACTCATTGATGAAATTT
ATGGCATTCAGAACAGTAAGTACATGACATCTGTTTTCACTAATAGGTAA
TATGAGAAGAATATCCTTTGTGGAGGCTACTGTTTGTATATTGCACACTT
AAGCATAATTTAAAGTCAGAGATCCGATTTTAATGATTCAGAGTGTAGAT
TAATACAGACCTTTTTGTAAGCAATTTAGCAACACATAAAACTTTTCTAA
CCCTTGGCCAAAGAAAACCCAAAGCCTAAGAATGTGCCTTGAGGAATCAT
TCCAAAAAAGAGGATCAGTG
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