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RNAz

Resource
https://www.tbi.univie.ac.at/software/RNAz/
RNAz
This link will bring you to the download page for RNAz which "is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs." The web-server version of this program can be found here: http://rna.tbi.univie.ac.at/

ncRNA Expression Database

Resource
http://nred.matticklab.com/cgi-bin/ncrnadb.pl
ncRNA Expression Database
"NRED integrates annotated expression data from various sources. Use this form to filter expression results data based on probe characteristics and/or the values of the expression data. If no experimental result set is selected, the form can also be used to search the probe table. All search fields are optional. For help and descriptions of the different fields, simply hover your mouse over the form labels."