Downloadable File
Organism:
Flavivirus zika virus (Zika Virus)
File:
Program, Pipeline Name or Method Name:
RNA Structurome DB
Program, Pipeline or Method version:
RNA Structurome DB
Algorithm:
PERL script
Source Name:
RNA Structurome DB
Time Executed:
05/24/2018
Materials & Methods (Description and/or Program Settings):
ZIKV genome was scanned to predict regions with unusual structural propensity. Using a scanning window (window size 120 nt with a step size of 1 nt) the MFE was predicted for the native sequence and 50 shuffled versions of that sequence. These shuffled sequences, which maintain the native nucleotide composition, were folded and compared to the native MFE in order to calculate a thermodynamic z-score.
min_score:
-5.00
max_score:
4.00